2x1 – Episode 1
2 months have past since Big Cy and his cohorts went to attack against the Whiskers at their burrow in the previous season's cliffhanger. It's winter and food is scarce, which is hard on the group since Flower has given birth to yet another litter! Youssarian is tired of licking Zaphod's boots... um, I mean paws! He leaves the group in search for some female company. Also, we get an update on most of the meerkats who were in the danger zone as of episode 1.13 and Kinkajou's role in the Whiskers group is finally revealed.
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2x2 – Episode 2
We find out that the meerkats competing with Youssarian for female Lazuli attention are two of his relatives. The two separated Whiskers groups finds each other and gets back home unscathed but what they don't know is that a cape cobra crawled into their burrow when they were away. Will there be a confrontation?
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2x3 – Episode 3
This episode is possibly the most gruesome yet, because of a certain horrific scene near the end. The Whiskers get into a fight with a bird couple over eggs. Mitch's litter-brother Einstein take a chance to approach the eggs when the birds are occupied with attacking the rest of the group. Will he be successful? The Commandoes - led by a mysterious fellow called Hannibal - go on a brutal attack against another gang. Things go particularly scary though when a meerkat is not only killed but seemingly feasted upon as well!
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2x4 – Episode 4
The Whiskers finds unguarded and unhidden tortoise eggs but they prove frustratingly difficult to crack for some of the younger meerkats. Mozart gets in Flower's bad books again after mating with Stinker, ex-lover Carlos' granddad.
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2x5 – Episode 5
Mozart has been evicted from her family again and is baring a nasty wound from Flower's nasty bite. It's important that she get back into the group soon or she might suffer Tosca's suspected fate. Mozart might be early in her pregnancy but Flower is going into labor any day now and is in a right mood, stealing food from pups of her earlier litter.
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2x6 – Episode 6
Mozart tries getting back into the Whiskers when they are out foraging but it's extra difficult when amorous Carlos won't leave her alone. She later tries sneaking into their burrow instead. Meanwhile, the Whiskers are having a very dangerous day with both a bird of prey to watch out for and the Commandoes to avoid a confrontation with.
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2x7 – Episode 7
The fight between the Whiskers and Commandoes end with a casualty but for what group? The Whiskers get into a fight with a very dangerous snake, a cape cobra. Also, how will Mozart's attempt to get back into the family go?
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2x8 – Episode 8
This episode continues on the same day the previous one ended at. Flower's pups are left vulnerable underground when Youssarian abandons his babysitting duty. The rest of the Whiskers gets into a fight with a rival gang upon discovering that a piece of a land close to the watering hole has been heavily scent-marked.
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2x9 – Episode 9
Flower and her gang become aware that the Lazuli has come back and launched at them so they flee. Worried about the short distance between their babysitting burrow and that of their arch-rival, Flower and her small group change burrow before Lazuli can retaliate but this drives them further apart from the main group who gave chase at Youssarian in the previous episode. Will they all find each other in the end or part into two families?
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2x10 – Episode 10
A subordinate meerkat evicting someone from the family is extremely unusual but in this episode, Mozart does just that to one of her sisters. Will this backfire on Mozart, or will Flower - who is supposed to be the leader - continue to tolerate this? As if things weren't strange enough already, Flower kills and devours a very large catch. The babysitting doesn't go smoothly as one of Youssarian's nieces wanders off while under his watch.
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2x11 – Episode 11
Summer has arrived. Disaster strikes when Blossom wanders off again.
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2x12 – Episode 12
Winter is fast approaching. Mozart is left to face the same dilemma her sister Daisy struggled with in <a class="ipc-md-link ipc-md-link--entity" href="/title/tt0787717/">Daisy's Choice (2005)</a>.
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2x13 – Episode 13
Winter returns to Meerkat Manor. The family has abandoned Mozart, who is trying to take care of her newborn pups. The rival Commandoes force a confrontation with the Whiskers.
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